<html><body><title>AT4G03490.1</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u420349001000i/AT4G03490.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u420349001000i/AT4G03490.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u420349001000i/AT4G03490.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420192501000i">AT4G01925.1</a></td><td>0.8295</td><td>DC1 domain-containing protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u190000048000i">ath-MIR163</a></td><td>0.826596</td><td>ath-MIR163</td><td>OMAT1P018560</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u126672501000i">AT1G66725.1</a></td><td>0.824765</td><td>MIR163</td><td>OMAT1P018560</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423493001000i">AT4G34930.1</a></td><td>0.806357</td><td>1-phosphatidylinositol phosphodiesterase-related</td><td>-</td><td>-</td><td>OMAT4P110250</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u526550001000i">AT5G65500.1</a></td><td>0.805257</td><td>ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ ubiquitin-protein ligase</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223108301000i">AT2G31083.1</a></td><td>0.792043</td><td>CLE5 (CLAVATA3/ESR-RELATED 5)</td><td>OMAT2P007370</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u523780001000i">AT5G37800.1</a></td><td>0.790637</td><td>basic helix-loop-helix (bHLH) family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u320370001000i">AT3G03700.1</a></td><td>0.789035</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521391001000i">AT5G13910.1</a></td><td>0.788367</td><td>LEP (LEAFY PETIOLE)</td><td>OMAT5P103910</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u524968002000i">AT5G49680.2</a></td><td>0.780508</td><td>cell expansion protein, putative</td><td>OMAT5P014200</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321846001000i">AT3G18460.1</a></td><td>-0.794983</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123282001000i">AT1G32820.1</a></td><td>-0.722182</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127577001000i">AT1G75770.1</a></td><td>-0.699955</td><td>unknown protein</td><td>OMAT1P022140</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423348001000i">AT4G33480.1</a></td><td>-0.692776</td><td>unknown protein</td><td>OMAT4P109670</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u324481001000i">AT3G44810.1</a></td><td>-0.683133</td><td>F-box family protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123667501000i">AT1G36675.1</a></td><td>-0.681546</td><td>glycine-rich protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u522454001000i">AT5G24540.1</a></td><td>-0.676291</td><td>BGLU31 (BETA GLUCOSIDASE 31)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u221364001000i">AT2G13640.1</a></td><td>-0.655695</td><td>Golgi GDP mannose transporter (GONST1)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423849001000i">AT4G38490.1</a></td><td>-0.654277</td><td>unknown protein</td><td>OMAT4P013410</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121916001000i">AT1G19160.1</a></td><td>-0.649775</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u420349001000i/AT4G03490.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0010556</td><td>regulation of macromolecule biosynthetic process</td><td>18/200</td><td>1.83</td><td>4.86e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0010468</td><td>regulation of gene expression</td><td>19/200</td><td>1.78</td><td>5.23e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0019219</td><td>regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process</td><td>18/200</td><td>1.80</td><td>5.83e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0031326</td><td>regulation of cellular biosynthetic process</td><td>18/200</td><td>1.79</td><td>5.94e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0009889</td><td>regulation of biosynthetic process</td><td>18/200</td><td>1.79</td><td>5.94e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0051171</td><td>regulation of nitrogen compound metabolic process</td><td>18/200</td><td>1.78</td><td>6.47e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0060255</td><td>regulation of macromolecule metabolic process</td><td>19/200</td><td>1.74</td><td>6.96e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0006350</td><td>transcription</td><td>18/200</td><td>1.76</td><td>7.01e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>B</td><td>4</td><td>GO:0080090</td><td>regulation of primary metabolic process</td><td>18/200</td><td>1.71</td><td>9.60e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0012505</td><td>endomembrane system</td><td>52/200</td><td>2.14</td><td>2.46e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>C</td><td>3</td><td>GO:0044464</td><td>cell part</td><td>125/200</td><td>1.37</td><td>6.47e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>C</td><td>4</td><td>GO:0031224</td><td>intrinsic to membrane</td><td>13/200</td><td>2.42</td><td>1.08e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>M</td><td>4</td><td>GO:0020037</td><td>heme binding</td><td>10/200</td><td>5.71</td><td>1.72e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0046906</td><td>tetrapyrrole binding</td><td>10/200</td><td>5.25</td><td>3.90e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0016491</td><td>oxidoreductase activity</td><td>23/200</td><td>2.73</td><td>4.29e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0046872</td><td>metal ion binding</td><td>28/200</td><td>2.06</td><td>9.06e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0043169</td><td>cation binding</td><td>28/200</td><td>1.95</td><td>2.39e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0043167</td><td>ion binding</td><td>28/200</td><td>1.95</td><td>2.39e-04</td><td><a href="http://omicspace.riken.jp/PosMed/search?actionType=searchexec&objectSet=gene&species=At&condition=GeneIds&associationDirectMode=2&associationRelationMode=2&geneIds1=AT4G03490&keyword=binding">0</a></td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0022857</td><td>transmembrane transporter activity</td><td>12/200</td><td>2.14</td><td>4.49e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0003700</td><td>transcription factor activity</td><td>18/200</td><td>1.78</td><td>6.28e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>147/200</td><td>1.63</td><td>6.45e-17</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>hypocotyl</td><td>-</td><td>20/200</td><td>8.57</td><td>3.07e-14</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>ipr011424</td><td>-</td><td>10/200</td><td>11.55</td><td>1.32e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>system</td><td>-</td><td>54/200</td><td>2.23</td><td>2.95e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>endomembrane</td><td>-</td><td>52/200</td><td>2.20</td><td>9.72e-09</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>expansion</td><td>-</td><td>38/200</td><td>2.59</td><td>1.83e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>differentiation</td><td>-</td><td>38/200</td><td>2.51</td><td>3.89e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>petal</td><td>-</td><td>37/200</td><td>2.54</td><td>4.69e-08</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>KW</td><td>0</td><td>stage</td><td>-</td><td>43/200</td><td>2.22</td><td>1.71e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>carrier</td><td>-</td><td>14/200</td><td>3.49</td><td>1.41e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>electron</td><td>-</td><td>13/200</td><td>3.65</td><td>1.58e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anthesis</td><td>-</td><td>29/200</td><td>2.21</td><td>1.99e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>flower</td><td>-</td><td>20/200</td><td>2.62</td><td>2.94e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>putative</td><td>-</td><td>42/200</td><td>1.82</td><td>4.00e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>visible</td><td>-</td><td>12/200</td><td>3.24</td><td>1.00e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>oxidase</td><td>-</td><td>10/200</td><td>3.64</td><td>1.11e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leaves</td><td>-</td><td>13/200</td><td>2.63</td><td>4.95e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>member</td><td>-</td><td>22/200</td><td>2.01</td><td>6.51e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>lipid</td><td>-</td><td>10/200</td><td>2.91</td><td>7.32e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>receptor</td><td>-</td><td>12/200</td><td>2.52</td><td>1.07e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>response</td><td>-</td><td>30/200</td><td>1.67</td><td>1.90e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>kinase</td><td>-</td><td>20/200</td><td>1.89</td><td>2.15e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>leucine</td><td>-</td><td>11/200</td><td>2.10</td><td>6.86e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>active</td><td>-</td><td>15/200</td><td>1.83</td><td>8.41e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transferase</td><td>-</td><td>12/200</td><td>1.96</td><td>9.10e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
AT4G03490.1
without_OMAT_gene
0.0